Get the co-accessible peaks in genome wide.

Get the co-accessible peaks in genome wide.

getCoaccessible(peak_anno, quant_matrix, window = 5e+05, sample_num = 100)

Arguments

peak_anno

The merged peaks annotation.

quant_matrix

The normalized matrix obtained by **quantification**.

window

The window size to shift.

Examples

  getCoaccessible(peak_anno="peak_anno.txt", quant_matrix="quant_mat.tsv", window=100000)
#> Error in checkGeAnno(): Necessary Annotation not exist. Please **addAnnotation** first.