Convert motif ID to gene ID.

Source: R/FootprintAnalysis.R

Convert motif ID to gene ID.

getMotif2Gene(motif_file, orgdb, tf_family)

Arguments

motif_file

The PWM matrix file.

orgdb

The orgdb name.

tf_family

The TF family files. Thee columns are included:Symbol Ensembl Family.

Examples

  getMotif2Gene(motif_file = "jaspar.motif", orgdb = "org.Hs.eg.db", tf_family="tf.family.tsv")
#> Warning: cannot open file 'jaspar.motif': No such file or directory
#> Error in file(con, "r"): cannot open the connection