Get the fitting time genes.

Source: R/TimeSeries.R

Get the fitting time genes.

getTimeGene(peak_time, peak2gene, rna_matrix, corr_cutoff = 0.4)

Arguments

peak_time

The result of **getTimeATAC** with the parameter return_matrix = TRUE.

peak2gene

The rds file obtained by **getPeak2Gene**.

rna_matrix

The RNA-seq quantification matrix.

corr_cutoff

The cutoff of correlation to get the reliable Peak2gene links. Default: 0.4.

Examples

  getTimeGene(peak_time = peak_time, peak2gene = peak2gene,rna_matrix = rna_matrix,corr_cutoff = 0.4)
#> Error in eval(expr, envir, enclos): object 'peak2gene' not found