Plot the RNA dynamic along the pseudo time.

Plot the RNA dynamic along the pseudo time.

getTimeRNA(
  peak_time,
  peak2gene,
  rna_matrix,
  corr_cutoff = 0.4,
  Palette = NA,
  return_matrix = FALSE
)

Arguments

peak_time

The result of **getTimeATAC** with the parameter return_matrix = TRUE.

peak2gene

The rds file obtained by **getPeak2Gene**.

rna_matrix

The RNA-seq quantification matrix.

corr_cutoff

The cutoff of correlation to get the reliable Peak2gene links. Default: 0.4.

return_matrix

Whether to return the result as data frame. Default: FALSE.

Examples

  getTimeRNA(peak_time = peak_time, peak2gene = peak2gene, rna_matrix = rna_matrix, corr_cutoff = 0.4, return_matrix = T)
#> Error in eval(expr, envir, enclos): object 'peak2gene' not found