Plot specific gene ATAC signal and co-accessible with tracks.

plotCoGeneTracks(
  samples_path,
  samples_suffix,
  gene_name,
  left = 30000,
  right = 30000,
  peaks,
  colist,
  coaccess_cutoff = 0.4,
  line_size = 0.8,
  curvature = 0.3,
  color = NA,
  back.color = TRUE
)

Arguments

samples_path: The bigwig (bw) file folder.
samples_suffix: The suffix of the samples. e.g. ".cpm.bw".
gene_name: The gene name.
left: The gene left flanking to plot. Default: 30000.
right: The gene right flanking to plot. Default: 30000.
peaks: The merged peaks.
colist: The co-accessible file obtained by **getCoaccessible**.
coaccess_cutoff: The correlation cutoff of co-accessible. Default: 0.4.
line_size: The curve line with. Default: 0.8.
curvature: The degree of curvature. Default: 0.3.
color: Color list to plot tracks.
back.color: Whether to plot backgroud color. Default: TRUE.

Examples

 plotCoGeneTracks(samples_path = "./signal", samples_suffix = ".cpm.bw", gene_name="ENSG00000103888" , peaks="final_res/meged.peaks.bed",colist="./coaccess/tsv")
#> Error in checkGeAnno(): Necessary Annotation not exist. Please **addAnnotation** first.