Plot genome tracks with co-accessible information.

plotCoTracks(
  samples_path,
  samples_suffix,
  chr,
  start,
  end,
  peaks,
  colist,
  coaccess_cutoff = 0.4,
  line_size = 0.8,
  curvature = 0.3,
  color = NA,
  back.color = TRUE
)

Arguments

samples_path: The bigwig (bw) file folder.
samples_suffix: The suffix of the samples. e.g. ".cpm.bw".
chr: The chromosome ID.
start: The start position.
end: The end position.
peaks: The merged peaks file.
colist: The co-accessibile result obtained by **getCoaccessible**.
coaccess_cutoff: The correlation cutoff of co-accessible. Default: 0.4.
line_size: The curve line with. Default: 0.8.
curvature: The degree of curvature. Default: 0.3.
color: Color list to plot tracks.
back.color: Whether to plot backgroud color. Default: TRUE.

Plot genome tracks with co-accessible information.

Arguments

Examples