Plot the differential footprint with Volcano, Bar or Lollipop.

Source: R/FootprintAnalysis.R

Plot the differential footprint with Volcano, Bar or Lollipop.

plotDiffFootprint(
  samples,
  cutoff = NA,
  plot_type = c("Volcano", "Bar", "Lollipop"),
  scale = 5,
  save_path = NA,
  file_prefix = NA,
  figure_width = 8.21,
  figure_height = 8.21
)

Arguments

samples

The two sample names to compare.

cutoff

The cutoff of fold change. Default is NA.

plot_type

Plot type. Three types are available: "Volcano","Bar","Lollipop".

scale
save_path

The path to save PDF file.

file_prefix

The prefix of PDF file.

figure_width

PDF width. Default is 8.21.

figure_height

PDF height. Default is 8.21.

Examples

  plotDiffFootprint(samples=c("NIP_YP1","NIP_YP2"), bindetect_path="/public/workspace/zhutao/encode/CAT",plot_type="Bar",cutoff=0.1)
#> Error in plotDiffFootprint(samples = c("NIP_YP1", "NIP_YP2"), bindetect_path = "/public/workspace/zhutao/encode/CAT",     plot_type = "Bar", cutoff = 0.1): unused argument (bindetect_path = "/public/workspace/zhutao/encode/CAT")