Plot the correlation of footprint score and TF expression. — plotFootprintScoreExp • cisDynet

Plot the correlation of footprint score and TF expression.

plotFootprintScoreExp(
  motif2gene,
  gene_exp,
  footprint_score,
  return_matrix = FALSE,
  cor_cutoff = 0.5,
  color = NA
)

Arguments

motif2gene: The motif to gene annotation file obtained by **getMotif2Gene**.
gene_exp: The normalized gene expression matrix.
footprint_score: The footprint score file obtained by **getFootprintScore**.
return_matrix: Whether to return matrix. Default is FALSE.
cor_cutoff: The correlation cutoff of TF footprint score and TF expression. Default is 0.5.
color: Color list.

Examples

 plotFootprintScoreExp(motif2gene=m2g, gene_exp="rsem_exp.tsv", footprint_score = ftscore)
#> Error in eval(expr, envir, enclos): object 'm2g' not found