A function to compare the GO enrichment result with Network. — plotGONetwork • cisDynet

A function to compare the GO enrichment result with Network.

plotGONetwork(
  target,
  orgdb,
  ont = "BP",
  showCategory = 50,
  category_node = 0.5,
  line = 0.5,
  category_label = 1.2
)

Arguments

target: The target genes result obtained by **getClusterTargetGenes**.
orgdb: The orgdb annotation package name.
ont: The GO type to enrich. Three type are available: "BP", "CC", "MP". Default: BP.
showCategory: The max category number to show. Default: 50.
category_node: The size of category nodes. Default: 0.5.
line: The width of the line. Default: 0.5.
category_labelThe: size of category label. Default: 1.2.

Examples

  plotGONetwork(target = res, orgdb = org.Hs.eg.db)
#> Error in eval(expr, envir, enclos): object 'res' not found