Plot specific gene ATAC signal with tracks. — plotGeneTracks • cisDynet

Plot specific gene ATAC signal with tracks.

plotGeneTracks(
  samples_path,
  samples_suffix,
  gene_name,
  left = 10000,
  right = 10000,
  peaks,
  color = NA,
  back.color = TRUE
)

Arguments

samples_path: The bigwig (bw) file folder.
samples_suffix: The suffix of the samples.
gene_name: The gene name.
left: The gene left flanking to plot. Default is 10000.
right: The gene right flanking to plot. Default is 10000.
peaks: The merged peaks.
color: Color list to plot tracks.
back.color: Whether to plot backgroud color. Default if TRUE.

Examples

 plotGeneTracks(samples_path = "./signal", samples_suffix = ".cpm.bw", gene_name="ENSG00000103888" , peaks="final_res/meged.peaks.bed")
#> Error in checkGeAnno(): Necessary Annotation not exist. Please **addAnnotation** first.