Plot specific gene with tracks and peak2gene linkages.

plotP2GTracks(
  samples_path,
  samples_suffix,
  gene_name,
  left = 10000,
  right = 10000,
  peaks,
  peak2gene,
  cor_cutoff = 0.4,
  line_size = 0.8,
  curvature = 0.3,
  color = NA,
  back.color = TRUE
)

Arguments

samples_path: The bigwig (bw) file folder.
samples_suffix: The suffix of the samples. Like the ".cpm.bw"
gene_name: The gene name.
left: The gene left flanking to plot. Default: 10000.
right: The gene right flanking to plot. Default: 10000.
peaks: The merged peaks.
peak2gene: The RDS file obtained by **getPeak2Gene**.
cor_cutoff: The correlation cutoff of peak-to-gene links. Default: 0.4.
line_size: The curve line with. Default: 0.8.
curvature: The degree of curvature. Default: 0.3.
color: Color list to plot tracks.
back.colorWhether: to plot backgroud color. Default: TRUE.

Examples

 plotP2GTracks(samples_path="./signal", samples_suffix=".cpm.bw", gene_name="ENST00000220244", peaks="./merged_peaks.bed", peak2gene="./All_Peak2Gene_links.rds")
#> Error in checkGeAnno(): Necessary Annotation not exist. Please **addAnnotation** first.