Plot the genome signal with tracks. — plotTracks • cisDynet

Plot the genome signal with tracks.

plotTracks(
  samples_path,
  samples_suffix,
  chr,
  start,
  end,
  peaks,
  color = NA,
  back.color = TRUE
)

Arguments

samples_path: The bigwig (bw) file folder.
samples_suffix: The suffix of the samples. e.g. ".cpm.bw".
chr: The chromosome ID.
start: The start position.
end: The end position.
peaks: The merged peaks file.
color: color list to plot tracks.
back.color: Whether to plot backgroud color. Default: TRUE.

Examples

 plotTracks(samples_path = "./signal", samples_suffix = ".cpm.bw", chr="chr1", start=10000, end=20000, peaks="final_res/meged.peaks.bed")
#> Error in checkGeAnno(): Necessary Annotation not exist. Please **addAnnotation** first.